About Fertility
Gut Health and Fertility: How the Microbiome Impacts Embryo Implantation

The Microbiome: The Body’s Hidden Influencer
The gut microbiome is often described as the body’s hidden “influencer.” This community of bacteria and microorganisms does far more than help with digestion. It plays critical roles in metabolism, nutritional balance, immunity, and importantly, reproduction and fertility.
When balanced, the intestinal flora supports overall health. But when disrupted, it can contribute to a wide range of chronic and inflammatory conditions, including:
-
Inflammatory bowel disease (IBD)
-
Certain cancers
-
Metabolic syndromes
-
Diabetes
Just like social media influencers spark conversation, the microbiome has its own form of “crosstalk” within the body. These signals can create either harmony or imbalance across multiple systems—and fertility may be one of the areas most affected.
How the Microbiome Affects Fertility
The Role of Uterine Receptivity
Fertility is complex, and embryo implantation depends on more than genetics. The uterine environment must also be receptive to support growth. One tool that measures this is the Endometrial Receptivity Assay (ERA), which analyzes about 280 genes expressed during implantation.
But implantation may not only be about turning genes “on” or “off.” The microbiome could act more like a dimmer switch, influencing implantation in subtle but powerful ways.
Lactobacillus and Implantation
Research suggests that a lactobacillus-dominant environment in the uterus may promote embryo implantation, while a non-lactobacillus environment could reduce the chances of success. This highlights the important link between microbiome balance and reproductive outcomes.
Gut Health, Probiotics, and Fertility: What’s Next?
The question now is: how does the gut microbiome affect fertility? If elements of infertility are influenced by gut flora, future therapies may include modulation or replacement of the gut microbiome.
However, it’s not always as simple as taking a probiotic. While probiotics may support gut balance, the stomach’s acidic environment often destroys much of the bacteria before it reaches the small intestine. More advanced methods may be needed to deliver beneficial bacteria to the right place in the digestive tract.
Supporting Your Fertility Journey
At Fertility Centers of New England, we remain committed to advancing fertility care with a holistic understanding of health, including the role of the gut microbiome. If you’re experiencing difficulty conceiving or want to learn more about the connection between gut health and fertility, our team is here to help.
Contact us today to schedule an initial consultation and take the next step on your fertility journey.